Plant Biotechnology Division
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Overview | Missions and goals | Competencies | People | Area of research | Facilities | Current research | Projects
 
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Overview
Jammu & Kashmir state is rich storehouse of medicinal, aromatic and other economic plants due to the wide variation of temperature (-20?C to 45?C ) and altitudes ( 300 to 8,600 meter above the sea level) found throughout the state. The Plant Biotechnology Division at IIIM, taking advantage of rich biodiversity of India in general and J&K in particular, uses cutting edge molecular biology and genetic tools to engineer metabolic pathways and produce elite varieties with desired chemoprofiles and for production of novel phytochemicals.
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Missions and goals
To prepare a detailed database of medicinal plants, their active principals and medicinal activities.
To enrich the existing herbarium and drug repositories with newer varieties.
Discover new phytochemicals as well as newer uses of existing phytochemicals in (a) Medicine (b) Health foods (c) Aromatics (d) Culinary (e) Beauty care (f) Oral care (g) Baby care (h) Life style ailments (like obesity).
Conservation of plant varieties with desired properties and development of agrotechniques for their large scale propagation.
Gene prospection, pathway elucidation and gene-expression and regulation analysis via systems biology approach encompassing transcriptomics, proteomics, metabolomics, genome annotations and bioinformatics.
Develop tissue culture and genetic transformation methods for medicinal plants.
Genetic engineering of medicinal & aromatic plants for making them resistant to diseases, to produce novel phytochemicals, to alter the metabolic pathways in order to overproduce desired metabolites and suppress production of toxic compounds.
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Competencies
A strong herbal resource base with huge biodiversity
Extension farms with different agroclimatic niches suitable for cultivation of varied medicinal and aromatic plants. These experimental farms are being used for large-scale field trials.
Large scale tissue culture facility and related expertise for micro-propagation of endangered varieties
A large herbarium collection, Repository of raw and synthetic drugs derived from plant sources and a database of all medicinal and aromatic properties associated with major Indian medicinal plants. This rich resource is used not only for experimental work, but the knowledge is used for certification and quality estimation of various plant based drugs sold in open markets.
State-of-the-art facilities and scientific expertise for chemical (GC-MS, HPLC etc) and molecular (DNA markers for genetic diversity) evaluation and quality assurance conforming to global standards
Facility and scientific expertise for modern day molecular biology techniques like EST library preparation, DNA sequencing, Full length cDNA cloning, heterologous protein expression and purification, in vitro enzymatic activity characterization, Transgenic overexpression of a gene, use of RNA interference for down regulation of genes in transgenics etc.
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People:

Sr. NO Name Expertise E-mail
1. Y.S. Bedi Resource Documentation, Identification & Authentication of plant material, Taxonomy. ysbedi@iiim.res.in
2. S.K. Lattoo Molecular Biology sklattoo@iiim.res.in
3. S.N. Sharma Biosystematics snsharma@iiim.res.in
4. R. Sapru Molecular Biology rsapru@iiim.res.in
5. S.G. Gandhi RNAi and Functional Genomics sumit@iiim.res.in
6. S. Gupta Biotechnology, Proteomics sgupta@iiim.res.in
7. S. Jaglan Biotechnology sundeepjaglan@iiim.res.in
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Area of research
Supply of authenticated plant material for all in-house & network projects including bulk collection of crude drugs for pilot scale studies
Collection, conservation, characterization of germplasm for morphological & agronomic traits and field evaluation using molecular tools for selected medicinal plants.
Molecular characterization of germplasm for assessment of genetic diversity for resolving taxonomical problems at genus / species and subspecies/ variety level.
Biochemical engineering of secondary metabolic pathway genes in medicinal plants
Establishment of cDNA libraries and annotated EST banks from utility tissues (leaf and root)
Isolation and molecular characterization of known pathway genes (squalene synthase, squalene epoxidase and CYP450 reductase) 
Establishment of tissue-specific proteome reference maps at defined physiological/developmental stages
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Facilities
Janaki Ammal Herbarium houses more than 21500 specimens representing 3254 species, 1,152 genera and 218 families. This facility is used by scientists from academia & herbal drug Industry as ready reference for authentication of plants. It is recognized internationally and is registered in Index herbariorum at New York, U.S.A under the acronym RRLH.

Herbal Drug Repository contains 3600 crude drug samples of authenticated parts of the plants, used as medicine. This referral facility is accessible to pharmaceutical industry, traders, medicinal practitioners, natural product chemists, students and academics and provides ready material for laboratory scale experiments.

Experimental Farms at different altitudes in Jammu, Srinigar and Yarrikha offer unique opportunity to conduct field trials on tropical, subtropical and temperate climate plants. Large scale cultivation of plants as and when required can also be carried out.

Molecular Biology facility contains 96 slot gradient PCR machines, Real-Time PCR, High throughput automated DNA sequencer used for sequencing large scale EST libraries, Gel Documentation systems and other such lab equipment for molecular biology work make it possible to plan and execute any mol-bio based project in the lab. We also have the facility to do differential expression analysis using 2D protein gels. The spots are eluted and then handed over to the analytical division of IIIM for identification. We also have softwares for automated analysis of DNA marker polymorphism and other routine molecular biology work.

Plant tissue culture and Hardening unit is used in-vitro regeneration and transgenesis. The facility is well equipped with laminar air hoods, plant growth chambers and culture rooms. Large green house is used for acclimatization of tissue culture raised plants before transferring them to the fields.

Cell Biology and Cytogenetics studies like Karyotyping and Fluorescence in-situ hybridization (FISH) is carried out using sophisticated microscopes and softwares for automated analysis.
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Current research
A large collection of germ plasm of 292 cultivars of ginger (Zingiber officianale) collected from north western part of India, has been established in the experimental farms of IIIM. We are carrying out Proteomic and Genetic marker studies from these accessions. From our studies, rhizomes show extensive differences in chemoprofiles, which will be later correlated to the genetic diversity and differential expression analysis of proteins.
EST libraries are being made from important Indian medicinal plants, Withania somnifera, Picrorrhiza kurrora and Podophyllum hexandrum. Nearly 1100 of these ESTs from Withania have already been sequenced and and assembled into contigs. Finally annotated EST banks from these libraries will be established.
Real-Time expression analysis, Isolation, Cloning and expression of known pathway genes like squalene synthase, squalene epoxidase and CYP450 is being carried out.
DNA marker studies for genetic diversity in Ocimum spp.
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Projects
1. Comprehensive Traditional Knowledge Digital Library ( CSIR Network Project)
2. Knowledge Network on Medicinal Plants (Sponsor : ICMR)
3. Database ( web enabled) on Medicinal plants of Himalayas ( Sponsor : NMPB)
4. Pathway engineering and systems biology approach towards homologous and heterologous expression of high-value phytoceuticals ( CSIR Network Project).
5. DNA Fingerprinting, Proteomics and Chemo-profiling of Traditional Ginger Cultivars of Northwestern Himalaya ( Sponsor: DBT )
6. Geranium propagation, demonstration and commercialization ( Sponsor: NHB).
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