Clinical Microbiology Division
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Overview | Missions and goals | Competencies | People | Area of research | Facilities | Current research | Projects
 
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Overview
Plant and microbe based pharmacophores for anti-infective activity including the oral cavity pathogens and M. tuberculosis, modulation of antimicrobial resistance through inhibition of microbial efflux pumps and immunotherapeutics are the major research areas of this group. The group is also characterizing the M. tuberculosis efflux pump proteins and exploring the new drug targets of M. tuberculosis using In vivo Induced Antigen Technology (IVIAT).
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Missions and goals
Search for plant based novel pharmacophores for anti-infective activity.
Modulation of antimicrobial resistance through inhibition of microbial efflux pumps.
Search for new drug targets and immunotherapeutics for M. tuberculosis.
Regulation of M. tuberculosis gene expression.
Application of plant based molecules for non-drug use in the area of personal care, oral care and skin care products.
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Competencies
Evaluation of plant based/synthetic libraries of molecules for antibacterial, antifungal and anti TB activity.
Animal models of infection for in-vivo efficacy of molecules.
Cloning and expression of microbial genes.
Differential expression of microbial genes through q-PCR.
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People:

Sr. NO Name Expertise E-mail
1. Inshad Ali Khan Clinical Microbiology iakhan@iiim.res.in
2. Surrinder Kumar Lab maintenance  
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Area of research
Anti-infective research with reference to identification of plant derived pharmacophores.
Antimicrobial resistance and microbial efflux pumps.
New drug targets and immunotherapeutics for M.tuberculosis.
Regulation of M. tuberculosis gene expression.
Oral microbiology
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Facilities
Biosafety Level-3 facility : State-of-the-art Biosafety Level-3 (BSL-3) facility for handling and experimentation with hazard group III pathogens. This is one of the five such facilities created under CSIR network programme on infectious diseases handling, storage and research facilities. This lab fully complies with the Biosafety in Microbiological and Biomedical Laboratories (BMBL) guidelines. This facility consists of two in-vitro experimentation labs and one animal handling (mice & guinea pigs) for in-vivo experimentations. Tuberculosis is the major thrust area of the institute and presently this facility is being used for handling and experimentation with M. tuberculosis.

Antiinfective research facility is actively working on plant based and synthetic pharmacophores with anti-infective activity including anti TB activity and novel mechanism of action. A large collection of bacterial, fungal and M. tuberculosis clinical isolates is available for extensive evaluation of compounds.

Oral Microbiology facility is well equipped with anaerobic work system, CO2 incubators and a large collection of oral cavity bacterial pathogens. Plant derived molecules are evaluated on a panel of oral cavity bacterial pathogens. The active molecules are further tested on a panel of tests such as biofilm inhibition assay, bacterial glucosyltransferase inhibition etc. A number of lead molecules are actively being pursued for product development in collaboration with global industrial partners.

Molecular Biology The facility is well equipped with PCR machines, Real-Time PCR, Electrophoresis systems, Gel Documentation systems gene pulsar and other such lab equipment for molecular biology work. PCR amplification, gene cloning, native enzyme purification and differential gene expression are some of the experimentations routinely performed in this facility.
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Current research
Evaluation of plant based/synthetic libraries of molecules for antibacterial, antifungal and anti TB activity. Identification of the active plant derived pharmacophore to build synthetic library around this structure. In vivo efficacy of the active molecule in the mice model of infection and other IND directed studies.
Modulation of antimicrobial resistance through inhibition of bacterial efflux pumps. The work started with the identification of piperine as bacterial efflux pump inhibitor has come a long way from there. Presently we have a large number of synthetic and natural molecules having broad spectrum bacterial efflux pump inhibition activity. Protein crystallization studies are in progress in order to determine the 3D crystal structure of some of the clinically important bacterial efflux pumps.
Characterization of mycobacterium tuberculosis efflux pump proteins in the lab generated mutants as well as clinical isolates and the use of bacterial efflux pump inhibitors in conjunction with anti-TB drugs.
Efficacy studies of plant based immunomudulators in conjuction with anti-TB drugs in the mice and guinea pig models of infection. The anticipated outcome of such combination will be the better clinical response of antiTB therapy in immunocompromised population of the patients and lower rate of reactivation of tuberculosis.
Identification of differentially expressed genes associated with pathogenesis of M. tuberculosis using In vivo Induced Antigen Technology (IVIAT) for potential use as vaccine or therapeutic targets. In this DST funded project, we are trying to identify these mycobacterial genes which are overexpressed under diseased condition. The identified genes will be validated through knockout approach. It is expected that some of these targets may emerge out potential drug or vaccine candidates against tuberculosis.
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Projects
Project Title Funding agency Duration Start date
Resourcing biomolecules from medicinal plants, microflora including higher fungi)- Major laboratory project CSIR 3 yrs Sept 2007
Synthesis and antitubercular activity of Benzothiadiazine, Coumarin and Diarylprrole congeners DST 3 yrs March 2009
Identification of Mycobacterium tuberculosis genes differentially expressed in TB patients DST 3 yrs Grant awaited
In-vitro evaluation of synthetic molecules for anti-TB activity. TCG Lifesciences, Pune 1 yr April 2009
Exploitation of India’s rich biodiversity- Network project CSIR 5 yrs April 2007
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